NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302281_10179610

Scaffold Ga0302281_10179610


Overview

Basic Information
Taxon OID3300030044 Open in IMG/M
Scaffold IDGa0302281_10179610 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014878Metagenome / Metatranscriptome259Y
F047242Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0302281_101796101F047242N/AALAEGAEIELTLRMPSEITLGENMRVRCKGRVLRIVKPADKGWMPTASVETPKKSAGNETQTQTQTQTQTKIGVAVCLNGYEYLPETDDSSADFRRISALHNPSETERPATPASGNPRAAAH
Ga0302281_101796102F014878GAGMHGIAVAVLTENRDHLSELQNRIEATRLARVVFANVGFPTGPTDSILRQIQDLRAEVVLIDISAENPQPAIR

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