NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311338_10653779

Scaffold Ga0311338_10653779


Overview

Basic Information
Taxon OID3300030007 Open in IMG/M
Scaffold IDGa0311338_10653779 Open in IMG/M
Source Dataset NameI_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004122Metagenome / Metatranscriptome452Y
F015781Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0311338_106537791F004122AGAAGGMTEKGLSDSGRRSAELRHEWQSFLGLLPVLDLQPTDPVLYQRCLTAVWLSRKSAISRTDLHQATGLGFQAEAVDFDLLLAQLVREEILEPIISSPFHFQIRRRNWTHPESAYAADDRRSLSAIAREEQAGRFRMLGVLGARIDNLRLPERRVQQIRKEREDLEQIYEATWLELENAIGSKAAEAIRKSVEETTEAGAVQLDLPLEKKR
Ga0311338_106537792F015781AGGMNSVVDTIVAAPASSEAHLPSRVLEIRPEESKLVCVRADGREFALSRLVGSNVRIGDEVLVPASTGTATADTEVYIRKPSLRRADVYHVKAGYAALPKLDKREEPFVRVQVAEGQLGINTIHIPCHV
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