NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311338_10571556

Scaffold Ga0311338_10571556


Overview

Basic Information
Taxon OID3300030007 Open in IMG/M
Scaffold IDGa0311338_10571556 Open in IMG/M
Source Dataset NameI_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006594Metagenome / Metatranscriptome369Y
F012405Metagenome / Metatranscriptome281Y
F033738Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0311338_105715561F012405AGGAGMVVSAAALALVEVGYVAWLESLPAFPSSAHPAEFLDLPLWYEHPRVGVTLLLTVLGGMIAWAAWGVFGFMCNRSHGTVAATQRAMANKRLKTAAFCAVVAGSDLLLIQFLRT
Ga0311338_105715562F006594GGAVENTVEHVLHLVRSRMSTEIPLGTAGIQNPSATRIVGAFRARFAKACDAGVWKRLSNAVLEPANPFDVKAGRQFRQEALILGTLVFVALGLAVYFNVTAVAR
Ga0311338_105715563F033738N/ADIYRKDDRIYVRYAIQNNGRSTYVPGAPGVFTLRSPRSSSTLYTLAHSQLIGDGIRITSEGQAPVKVLNAEVRANTVAPGGATWGLVVFEWPPRTNGPTVLKFAFPSDGAGEVSAVLVL
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