NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311338_10221195

Scaffold Ga0311338_10221195


Overview

Basic Information
Taxon OID3300030007 Open in IMG/M
Scaffold IDGa0311338_10221195 Open in IMG/M
Source Dataset NameI_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2158
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080274Metagenome / Metatranscriptome115Y
F080766Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0311338_102211952F080766AGGAGMVKTGVFSLALAAALISFAQPAAAQNYTGKPKPTIQDYGPFPVKSQAKGTLTTKPAATKSAATKSECGNPASACLFYGGDFVDNSLGSPFLPNGLANESTLLVPGTPYGAATWVPFTVPAGQTWNVTGLFTNNLSTYGVLDQGSEPTAVAAWSINQEVFPGNAGTVIDSGTSPATSTPTGRAAFDLTEYTVQVTGLSIVLTSGSYWLSVVPICSNTADPYCDGIFFTTDVEYINTTPTNAYGPPEPVYASYFDSPAFGLSFDPTNGGPGACAGEGCDAFSAGVLGKKAAK
Ga0311338_102211953F080274N/ANIAGIGGANDGRNHYIVHFSAPTNSLVVRNSQLGGLPSNSLVHAINLGVNTMANTIIQNCVFNFLNDSVVGTTNNRVVVTGNTSFNTNSSGKSIDLHGTGSMVYVGNYWDVPPTALLPIISN
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