Scaffold Ga0299907_10202345

Overview

Basic Information

• Taxon OID: 3300030006
• Scaffold ID: Ga0299907_10202345
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1638
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F016640	Metagenome / Metatranscriptome	245	Y
F025222	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0299907_102023451	F016640	GGAG	MISIIFMVAIVAGIGWMAWRRWHDWRTPIRPQLSAERSPQTRAFEAFAHGNSCLAEGRFADATAAFQRAGTLDPKRPYVAERLAEVARQHHAASAPVPVAAGG
Ga0299907_102023452	F013869	GGAGG	MTIAKVLAVYKTAPIVLVVESAEGTVCELSLRDLRGAGHRLSDGARTSLIEEYRLFTCQPVAN
Ga0299907_102023453	F025222	AGGAGG	MIAFDAMEPEQMAFLYELYTRSAGDARQGVPYEALIDALGFDERVTKRIQCALERAGLVDLTTVPPMTHMGRPIMDHAPRHRRQQTIGMTPHGMRLMEDIFATRADTARPTPSASPPV