Scaffold Ga0299907_10145439

Overview

Basic Information

• Taxon OID: 3300030006
• Scaffold ID: Ga0299907_10145439
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1959
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007547	Metagenome / Metatranscriptome	349	Y
F041334	Metagenome / Metatranscriptome	160	Y
F054428	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0299907_101454392	F007547	GGAGG	MQPLPPQLELPEGDRFTLPTVSAVRELVPPGGQLPAHMVLMMICGKELWVPLDKEIARQMANILAPFRE
Ga0299907_101454393	F041334	GGAGG	MAAITRSDSDTARTIFYVVAILMAIYGLALLVFPQGMFTLSDDPGVPANPGWVRWAGGFVLGTAVAAWLAASNPESQRPLMVGLATAFTLVTLALLYSNLAGDYRGVQWLSWLQILGNAALAAAIWWLSSKFAANTPLRKAAPKAKA
Ga0299907_101454395	F054428	N/A	MPLNEIPEYLRPETRSLIDSALEQAWQELKEDGPADVALARHKLAGTIVALASVGETDPAKLKRFALHAARGMRVSTLGDGKGRRVRNNVR