NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10481475

Scaffold Ga0311339_10481475


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10481475 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021139Metagenome / Metatranscriptome220Y
F026322Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_104814752F021139N/AMTRITLRQATHEDWPRIIAVHQHHQAAQGTSYELPWLFGPSIMLALVGVDEAGAIRNCIYAEAVAELRFVGCDAKATACSRGEIDGFVYVLKRMGFRWLECFVPRKLKRTIQKPLVRAGFTCVDRELAHFTRDLRGNP
Ga0311339_104814753F026322GGAGGMFSLHQQYLDLASGFHVIELRDERGNRHLLQLAVGHDACPACGAVHPKDNLGSLDPAAAVRKVAQALNTSQQQMLSYAGRHGLTVR
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