NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311339_10108020

Scaffold Ga0311339_10108020


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10108020 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3408
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F026617Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_101080201F026617N/AIFVGVPTGAATTPNTILMMDYRDLDSFDDISQRPPINITYTGRKTATDKTRKWSIWTIAANSCAIIERTNGTAVVTMGGGTPGVGGGATTGKIYQLVDGQNSDDGAAINSYYTTHFFPERAVEQSLSLGAHRKLFSYLTMYVEGAGNLALTTFVNSESNPQTQQPLPLSSPSLKDLELPINVLGERVAFQVGTSQSGAWFRLQKFNPSLRIDPWAPVRGGN
Ga0311339_101080203F000781AGCAGMLTISQIAPLKDRDPYLYETLTKIVSAVNAASQSAGVDSSTPSPAPSPIASVMVQAANGWFDVAITDPSATRPGLFYFAESDTAPSFHAPRVYFLGASRNLYTQLGNQTLYWRAYSQYVGSLPSTPITFGSPPTAVVGGGTAGPTPLPSSGSGTLPNGLLRGGNGFGTNTGARVTPKTLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.