Scaffold Ga0311342_10460875

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311342_10460875

Scaffold Ga0311342_10460875

Overview

Basic Information
Taxon OID	3300029955 Open in IMG/M
Scaffold ID	Ga0311342_10460875 Open in IMG/M
Source Dataset Name	II_Bog_E2 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1079
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017589	Metagenome	239	Y
F086463	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311342_104608751	F086463	N/A	KMPLSASTPYAGSLVESGGSLYQQASFQNNAWHTYASNLPTLGNLGGTTYPTTPGPNTSAGTGGTYLSLNINGTPITADFVADQSMAAQNASYGRTQQSANLQVPGLMVA
Ga0311342_104608753	F017589	GAGG	MPGNLLAAVPNGVMPFSLCTAFTEGREYAQLQNQYRDGTIQRSQLAQTSRRTFRPNMRLSAAQLSTIYSFLVSQNFGMTPFLFYNPFDVAPGQQIGSNYDSTGANTQG

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