Scaffold Ga0311346_10282064

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311346_10282064

Scaffold Ga0311346_10282064

Overview

Basic Information
Taxon OID	3300029952 Open in IMG/M
Scaffold ID	Ga0311346_10282064 Open in IMG/M
Source Dataset Name	II_Bog_N3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1732
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024354	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311346_102820642	F024354	GGAG	VNAVRCVDCGYLSKRARIQEGGWRAHEGYHEADSVFRKNPSESFEFVPGETSALTAGEIGCYRQAANLSAEIRAVREAKRISAVDPAQEVLNRSRQCAKFFIYEPGVDPPGHLVEEKAAALEEDRKRFEQTLADFQLKLSALESGRAWRLGLYALIATLILGCVHIWASAISMPPDAIGISFGRRVLTYTQTVAAWFNRTF

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