Scaffold Ga0311346_10260997

Overview

Basic Information

• Taxon OID: 3300029952
• Scaffold ID: Ga0311346_10260997
• Source Dataset Name: II_Bog_N3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1836
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041939	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311346_102609971	F041939	GGAGG	MIAKPAIGWLNSDPELLLINDVTVVFNAMTDNVDIYANPDPPLAEIKLGLDNYTTAVYLPNPSPTDTINKNNLRLVLTTKVRSLSYYVAKACNGSLANLIKSGFPPQKGKGQPVGPPAQPQGLMVSHGPQLSQLVAKVGPTFGAVFYNYRLTANTPGAVPVIVQDTAATHTFPGLISGVK