NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311346_10169619

Scaffold Ga0311346_10169619


Overview

Basic Information
Taxon OID3300029952 Open in IMG/M
Scaffold IDGa0311346_10169619 Open in IMG/M
Source Dataset NameII_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2526
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057847Metagenome135N
F066389Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0311346_101696191F057847N/ASHMPETLPVFMKGERKPINCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVIDLRPHEHEWAIDHSYCTVCNKSTQQINEEQDEQTHPTAVQ
Ga0311346_101696195F066389AGGMPPTEDLNLSVGTEITATDVPYGSSYTNGHLYGAQAMGNILSGDLQNPDSAPLTEAFDPRTGTTYHGFRFPGNVVQDPRIPVGTIAMINSNCHMVLMTPDGRTVECDVRDVMLNVDPARAMSERIALKAGEFGSGTIRGTMQMSPESHKGLMRAFGFTDEPKPVIVPEEDLFEDRTW
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