Scaffold Ga0311371_10601875

Overview

Basic Information

• Taxon OID: 3300029951
• Scaffold ID: Ga0311371_10601875
• Source Dataset Name: III_Palsa_N1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030591	Metagenome / Metatranscriptome	185	Y
F066974	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311371_106018751	F066974	N/A	MISFRLGAVALAFLGVSGQRDGARIDALAREYGDGWISVWMKERKVDKSWIDYYEGARQHEIQMAS
Ga0311371_106018754	F030591	GAGG	VAIKRWMLSVSAVALASAVTAQAQTPVDVGGTFQQIGQAANAWIPAITQEAAF