NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311371_10194893

Scaffold Ga0311371_10194893


Overview

Basic Information
Taxon OID3300029951 Open in IMG/M
Scaffold IDGa0311371_10194893 Open in IMG/M
Source Dataset NameIII_Palsa_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3016
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047532Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0311371_101948932F047532GGAGGMKRVIIVPVMETRQFAGMKIIARGGSIAALVGDTFAERTRSAFDSEDSFFYSVAGGHADLYTFNTLKEAARFAKGKIEALMALERSVDTDRADATGSSKIGPIAVSNPGRRRERA
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