Scaffold Ga0311371_10004134

Overview

Basic Information

• Taxon OID: 3300029951
• Scaffold ID: Ga0311371_10004134
• Source Dataset Name: III_Palsa_N1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30976
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045820	Metagenome / Metatranscriptome	152	Y
F062395	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311371_1000413426	F062395	AGGAGG	VKRVVASSHVHAETKTSFRYEATWHIEGPLLTWKAEVTLPGRRWSLAGGTPEWTGGSEAKAVRDDVGRSIDGLELA
Ga0311371_100041347	F045820	AGG	MNPKDSARTQDDLPDGRNGRVVGENDDNILESIGKAVVAPVEGADEDAEPVDAGHGRAFVDLTRTLPQGQKETGAPNAPKPQGKAL