NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311352_10258136

Scaffold Ga0311352_10258136


Overview

Basic Information
Taxon OID3300029944 Open in IMG/M
Scaffold IDGa0311352_10258136 Open in IMG/M
Source Dataset NameII_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1464
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F005822Metagenome / Metatranscriptome389Y
F011771Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0311352_102581361F011771N/ATRFGGLDQVDWLMIVISVLLGTVAKQHHFLDLSEQFLEWVLPFLLMVAGYRTRRKVTELIESWRAKAKSPSSE
Ga0311352_102581363F005822GGAGMKVSEQPTAANGAESTADSKITHPPAGEGRRSRAVKDSKPTLPRNTATRRRRNRQDNSETSGEERFFLASGSSDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPVLRKDGLKKNNPAS
Ga0311352_102581364F001528AGGAGMSERNQIVVVLIVSLLLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGGPSVQ

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