Scaffold Ga0311352_10258136

Overview

Basic Information

• Taxon OID: 3300029944
• Scaffold ID: Ga0311352_10258136
• Source Dataset Name: II_Palsa_E1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F005822	Metagenome / Metatranscriptome	389	Y
F011771	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311352_102581361	F011771	N/A	TRFGGLDQVDWLMIVISVLLGTVAKQHHFLDLSEQFLEWVLPFLLMVAGYRTRRKVTELIESWRAKAKSPSSE
Ga0311352_102581363	F005822	GGAG	MKVSEQPTAANGAESTADSKITHPPAGEGRRSRAVKDSKPTLPRNTATRRRRNRQDNSETSGEERFFLASGSSDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPVLRKDGLKKNNPAS
Ga0311352_102581364	F001528	AGGAG	MSERNQIVVVLIVSLLLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGGPSVQ