Scaffold Ga0311340_11017982

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311340_11017982

Scaffold Ga0311340_11017982

Overview

Basic Information
Taxon OID	3300029943 Open in IMG/M
Scaffold ID	Ga0311340_11017982 Open in IMG/M
Source Dataset Name	I_Palsa_N3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	679
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002559	Metagenome / Metatranscriptome	548	Y
F026582	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311340_110179821	F002559	GGA	MKMNLRHGVWAVTVAMAIGFGGFAVQAVAAPFQDQDYSKNKTYQQGVREGQADQVKKVDHSKKRHFKKDEDQKAYEAGYQKGRGN
Ga0311340_110179822	F026582	AGG	MRKYSFTIITGAMLSAIFAFAAFASDHRAFNGTWTLTPAKSDFAGQPVVQTGTVTISEHDGIIIVERSFAYAGAAETY

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