Scaffold Ga0311328_10181572

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311328_10181572

Scaffold Ga0311328_10181572

Overview

Basic Information
Taxon OID	3300029939 Open in IMG/M
Scaffold ID	Ga0311328_10181572 Open in IMG/M
Source Dataset Name	I_Bog_E3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1648
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008642	Metagenome / Metatranscriptome	330	Y
F093390	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311328_101815722	F008642	N/A	MEETQVREIFDTGLSKIRQEIKSRLVPHGLYGSVIQVDIESAGSGPAGSTIELTVKDRHAHRSFDRVQIEDCCLRVRGEVLLGIISMIEEVSA
Ga0311328_101815723	F093390	N/A	MTHIQFLQAPLQAKISVARVFWLYGVAGSLVYGCLEFFIDPGNTFLMRLYTIGGGLYSTYVIVGTYRCAVNCATVGMARFVRISCVLSLLLLPILTYLELSGALSSDLSQLDQLDL

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