Scaffold Ga0311328_10040680

Overview

Basic Information

• Taxon OID: 3300029939
• Scaffold ID: Ga0311328_10040680
• Source Dataset Name: I_Bog_E3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4228
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025197	Metagenome	202	Y
F067576	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311328_100406801	F025197	N/A	MDQKVLGELARLGGLQKYLLMQIKGLPDEEGLRRELNSTLSAVHNAVRVLNTITVQ
Ga0311328_100406806	F067576	N/A	PSLLGLDWSSFVTRKFPDYAEQIRFWNPPEFISYGFSALDAYATAVLAAHFSYCSLGALNFTCSLKQCGPESQMHLEFATIPERGSIDPDSVMLELLSSFPRFLQTKRIEAGAIFFLEGEGCGMQFAYPGRMVAKASPFLRDRPDERWPQVTLSLTPTDELRIRAQDILAFRLSSTPVEGNPN