Scaffold Ga0119945_1031965

Overview

Basic Information

• Taxon OID: 3300029933
• Scaffold ID: Ga0119945_1031965
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 594
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F052558	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119945_10319651	F022860	N/A	VTENSWTLAGTGLVLITLSGPTLRQALWITGVALVLHSLLTFTQGEDNE
Ga0119945_10319652	F003378	GAG	MEIANKTVAKFLDLGQRLFSLFLANALPAVTGGALIGVDVAKSALLAGFMAVVQVVQRLAAASTDGELTSEEIAEAFGKKA
Ga0119945_10319653	F052558	AGAAGG	VADKYPVVKVQLCSHLKGVKPGELSQELLRGIEGKGKLHHCAADAYEAMDAAANAEGIDLSPT