Scaffold Ga0119945_1001351

Overview

Basic Information

• Taxon OID: 3300029933
• Scaffold ID: Ga0119945_1001351
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3711
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022190	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119945_100135110	F022190	GGAGG	MSRVLSIDELRFEDDGLLVVDAVVDDAVVVRPQTHLDPQEWGPALCRGSLYLSDEDLIPATDAELCRLLSERVDDWAPIDTSDRDD
Ga0119945_100135113	F001841	GGA	MGQFEPPNFFLGLLRVAAWLFWRDPMAKAEKPQPKPPRRPTLGYTVGDIPFELLAIVRVAWYRRGMAYEVEEYQIEECPDAQAQFHYIVGGALKQGADVCVLTQYQPEELGVPV
Ga0119945_10013512	F021513	N/A	MNMHILSEHQFQQIEQALTQALVALQQGQHIELDLNNSKQTIQLPAGEKIVRKPQSQSKTRKSSRKGRRGVASLTENKVLEIKRQLAAGGKSVAKIADEFGVHSTTINNIKWGKTWKNVAIQQDVVEVVA