Scaffold Ga0119944_1007533

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1007533
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1700
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F004666	Metagenome / Metatranscriptome	428	Y
F012013	Metagenome / Metatranscriptome	284	Y
F015988	Metagenome / Metatranscriptome	250	Y
F050227	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10075331	F050227	N/A	SDYENKCRDCDSENTLEYCESDCGEICSSCNWLGEADLDCVKECQTHKIYLDSEHVPDYRMEQING
Ga0119944_10075332	F000868	GGAG	MADVSFLDNENQMVIDAEMSAIADQLLDDWIQSNLDEGVFYSDYQIAMMCDSNYLKGRFNQYYDLKPEDEHYIEWDEEA
Ga0119944_10075333	F015988	AGGAG	MESEYINRTGQLKEYIKLHIISLEQDLENISQEMEELDPESKACKELDFEYNYISGQSIATRHILSVVEDILG
Ga0119944_10075335	F012013	AGG	MDKANINEPLDLQEATRRDDVYNQLNEIIDKLEDISVFPSLMWVWAFDVMREIFENYQIKDLAESDYVDEAVPEGITLKQIFDKFWEDVDGFGLSMDSGGDIIEETIRDWMRENDFLVALDDDGWLDD
Ga0119944_10075337	F004666	AGGA	MTTKREYLASKGITVGRRGRFSAAAKQALAEADKAGIKF