NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1007533

Scaffold Ga0119944_1007533


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1007533 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1700
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F004666Metagenome / Metatranscriptome428Y
F012013Metagenome / Metatranscriptome284Y
F015988Metagenome / Metatranscriptome250Y
F050227Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10075331F050227N/ASDYENKCRDCDSENTLEYCESDCGEICSSCNWLGEADLDCVKECQTHKIYLDSEHVPDYRMEQING
Ga0119944_10075332F000868GGAGMADVSFLDNENQMVIDAEMSAIADQLLDDWIQSNLDEGVFYSDYQIAMMCDSNYLKGRFNQYYDLKPEDEHYIEWDEEA
Ga0119944_10075333F015988AGGAGMESEYINRTGQLKEYIKLHIISLEQDLENISQEMEELDPESKACKELDFEYNYISGQSIATRHILSVVEDILG
Ga0119944_10075335F012013AGGMDKANINEPLDLQEATRRDDVYNQLNEIIDKLEDISVFPSLMWVWAFDVMREIFENYQIKDLAESDYVDEAVPEGITLKQIFDKFWEDVDGFGLSMDSGGDIIEETIRDWMRENDFLVALDDDGWLDD
Ga0119944_10075337F004666AGGAMTTKREYLASKGITVGRRGRFSAAAKQALAEADKAGIKF

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