NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1004818

Scaffold Ga0119944_1004818


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1004818 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2190
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033013Metagenome / Metatranscriptome178Y
F088884Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10048181F033013N/ALGYGTQVLQPFLMAIQLTAKASSTKTVMLQLDPELYVRIKAAAKHYNMPAAAAMRQILEQGIDEVEANIA
Ga0119944_10048183F088884GAGMKLYAPEHAGKYVWQCADAKTRAVSYTAINSTSPPPDAAYGHPLGRYDGDGCYWTYIPNAGEEDPKSPRSARFAKHPTAEQEMQAAIKAKVWGSLNSFGSYRETEF

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