Scaffold Ga0119944_1004089

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1004089
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2411
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F018349	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_10040891	F000450	AGGA	VGDRANFAFVQPNGNTIVLYGHWAGHKMLAQLAEAVSFAKPRWNDPAYATRIAISRLIGDQWNMETGWGLHVNEIGDNEHKIAVVDFVQKTFSLHAEADFRDQSNKVRGMNNDPIFVQDLDTFCEKYAEQFVLV
Ga0119944_10040893	F018349	AGGAGG	MDYKEGFQDGVKFAREVIANNIRQWAETHDNGETLDWVADQIEYGTVDYDL
Ga0119944_10040894	F000311	AGGA	MYFELTAPNQIALQRAFWSAEMMGLDPMLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSEYEPTGYTRR