NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1002451

Scaffold Ga0119944_1002451


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1002451 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3198
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027748Metagenome / Metatranscriptome193Y
F029368Metagenome / Metatranscriptome188Y
F064683Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10024515F027748N/AMTTATRLTASEARSAIYDLADLYSWETVAKEMVCRLSGDEARDFLEDFTRLYAD
Ga0119944_10024517F029368N/AMRYNPATDRAISIDEIAAQCRAAILKADHDAALDRIADRLYDEVLSVARWENDLLIAA
Ga0119944_10024518F064683N/AMTADLATALLNRASNGSELLQILDSIADEVTEANINDAAAHYAAISAPTAEPIQF

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