Scaffold Ga0119944_1000370

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000370
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7840
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F004314	Metagenome / Metatranscriptome	444	Y
F029725	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100037016	F004314	GAG	MYDDYDLDYTYATDYSYDLDEYYAQDLDLDEDYARDGQDYESLAYRHYA
Ga0119944_100037022	F029725	N/A	MTNRTELEWFLLEKCREDPDLFATVISEYVWNLSESKLDELEDFLSNNFGDD
Ga0119944_10003703	F000744	AGGAG	MTEANVNLNVHEIGVILSALQLLNLRDENQIAREYGSVPALYNKLYSVFEQMDSSQTGLRNDVVPSF
Ga0119944_10003704	F002243	GGAG	MPDFPTLQSKDGTMLVGFYPVATPYGDISQEWCMQILSWKGIDQISKKYLNRVEKSLAIRDRLAYDYVVTGDNQDLPQQGNPFYGAC