Scaffold Ga0119944_1000353

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000353
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7991
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031405	Metagenome / Metatranscriptome	182	Y
F064508	Metagenome / Metatranscriptome	128	Y
F082112	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100035310	F082112	GGAGG	MLSFKQHVQLDEGNPLSRLAKHAEEGRHYAILSSQRPHDEVSPEQNKKNHEELKKKLTAQGYAHKEVEGHWEGGKEKSILVHAKGKGDEHGKQLLHDIKKHGEHYNQDSILHHDGKTATLHGTNKTGFPGHGKTENVGKMAFNKPHAPFQTETKPKSDKPLKPGRTSKGSARFTTE
Ga0119944_100035315	F064508	GAGG	MSKFKQWLAAKYLQLEQQAVDAIGTANFYGNLFTDRQKFNIIVFFMGLFALSGLHGAVQFVALVYIMSKMTPPDKDDKQE
Ga0119944_100035317	F031405	N/A	MMIRIYSSSKKKKLTKKQLQEQQDFISSINKIPLPSGGRFPASAPKTVKAKPLMPYRVKREVSHAPSLPDTHKGALTKTGIMKDYHKLTASDREIVADVASCTAPMHKGNYVYVTPGINPAGLGRKNEVL