NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000130

Scaffold Ga0119944_1000130


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000130 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12402
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011666Metagenome288Y
F033013Metagenome / Metatranscriptome178Y
F038240Metagenome / Metatranscriptome166Y
F056612Metagenome / Metatranscriptome137N
F091645Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100013011F011666GAGGMQPSTLMEWHPIERTQESYFSEVATAKMLEEWLKNGDIKGIYNAALLLNTALHQQRTMAKWLAGEAARNLGRPELADEMLQKAISQDQA
Ga0119944_100013015F091645N/AMAIDFTALFPEEPQPNSGPGMSYCVAPNARMFDYELVMPGERRMRGCLRAVDAKDAKRILLNRHPAATQIDIGKGRRIFSSSKKA
Ga0119944_100013017F056612GAGMSDFESAFDAKLTLFDVKQKKSDKGPDKTGTVEIELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQTSTTGTEYISGKLWAKKPDTVGMKPVF
Ga0119944_100013018F038240N/AMATPAGNKMRVQVLLDPEALSYMEREVQLRYNTANRVTVSSLANEIIKSHYAILESQDE
Ga0119944_100013020F033013N/ADARQPWKSGYGVLVLQPFAMAISLTAKSKSSKTVMLHLSPELYARIQNAAKRHKLPAAVAMRQMLEQAIDEVESNEA

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