Basic Information | |
---|---|
Taxon OID | 3300029930 Open in IMG/M |
Scaffold ID | Ga0119944_1000130 Open in IMG/M |
Source Dataset Name | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hong Kong |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 12402 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | China: Pearl River Delta area | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .5 | Location on Map | ||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011666 | Metagenome | 288 | Y |
F033013 | Metagenome / Metatranscriptome | 178 | Y |
F038240 | Metagenome / Metatranscriptome | 166 | Y |
F056612 | Metagenome / Metatranscriptome | 137 | N |
F091645 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119944_100013011 | F011666 | GAGG | MQPSTLMEWHPIERTQESYFSEVATAKMLEEWLKNGDIKGIYNAALLLNTALHQQRTMAKWLAGEAARNLGRPELADEMLQKAISQDQA |
Ga0119944_100013015 | F091645 | N/A | MAIDFTALFPEEPQPNSGPGMSYCVAPNARMFDYELVMPGERRMRGCLRAVDAKDAKRILLNRHPAATQIDIGKGRRIFSSSKKA |
Ga0119944_100013017 | F056612 | GAG | MSDFESAFDAKLTLFDVKQKKSDKGPDKTGTVEIELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQTSTTGTEYISGKLWAKKPDTVGMKPVF |
Ga0119944_100013018 | F038240 | N/A | MATPAGNKMRVQVLLDPEALSYMEREVQLRYNTANRVTVSSLANEIIKSHYAILESQDE |
Ga0119944_100013020 | F033013 | N/A | DARQPWKSGYGVLVLQPFAMAISLTAKSKSSKTVMLHLSPELYARIQNAAKRHKLPAAVAMRQMLEQAIDEVESNEA |
⦗Top⦘ |