Scaffold Ga0119944_1000115

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000115
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12828
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006300	Metagenome	376	Y
F011293	Metagenome	292	Y
F013882	Metagenome	267	Y
F014256	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_100011513	F006300	N/A	MLEDWLKAFVAGSVAVLITSDYNVEGALKAGLAAVLPLIYAWANTKDHRYGRK
Ga0119944_100011521	F011293	GGAG	MAATRPDPGDAAYVAWQLTKNGDRMAQYGHPWDDYTMVRRIFGVLTNFKHNLTVQEAIMFMVAVKLARLMTSLDREKLHEDSLIDAIGYLNCLHMVDAKDNLVDAPLHIVGDMWIDK
Ga0119944_10001155	F014256	AGG	MPDQLFKTGYDQLVTTLQTITGLKVFDDPRTLNPPCALVEAPTISLNTNVNADMEFRVVIIAPGIGDNRTMDTLLDTADLVREAKIGLTAARPTTVSYGGMDYSAYQLTIRTKVSP
Ga0119944_10001158	F013882	GAG	MAVDSTVTIVGVKETLRHLQKLEPDTAKAIKAEFKQIVKPIVDAAKPQVRELPLSGFARNWKGGKIMPWDKSAVQKSIIARFSNRKRGNSLAVFSVTMKSPAGTIFDMAGKASPSRLAAALDQLAGRPSRLMWPTYERHADQVNENLARLVEKITDEANRRLVG