NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000050

Scaffold Ga0119944_1000050


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000050 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17282
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010155Metagenome / Metatranscriptome307Y
F011844Metagenome / Metatranscriptome286Y
F079966Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100005012F010155N/AMKDSSNNVRTIYVNALNGNLSYNGKDVPVYGQTPFRTLPQNYVIISSITENANNTNNSFQNTVSVDIDIFSQQYRVNDLSVVDNISGQILNILIPIPGIIGFDDSDFEIFPMSRTNSVYLPLYDGDNYVARKIITINNLVNQK
Ga0119944_100005013F011844N/AMVQVLGAAQAIEIDVTGGSNFDDLVCLSSSSINGTADSSSTQTNCGVLTSVGFPQMTLNFDAICKTDPTAGSEISYNSLLQAFNLKTLVNVRVQNPVVTGSSVGAAYYHQFYGYITSLTWTQSTTEFISFSGTIVSSGGIDVTV
Ga0119944_100005018F079966N/AMADAVKSEGLVLAVTNASGNVYPFACSRNATLSITRDFLELAPRSNGIFREYLANRTSFTVSGSGLIKMSESYVQPFTFFDTFIEGSDNEFIAYLDIIDPQGNYKVYQFTCIIQDLSIDSSVGNYGAYNYTLQGTGPITEITTVDSYVVSSGKITARSTSTFKLVAVGIEGQWYYNYTVTNEGGGVFSITVGTSFNGKTVKAAYISI
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