NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000010

Scaffold Ga0119944_1000010


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000010 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30215
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (91.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002301Metagenome / Metatranscriptome573Y
F014845Metagenome / Metatranscriptome259Y
F084182Metagenome / Metatranscriptome112Y
F091940Metagenome / Metatranscriptome107Y
F099184Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_100001018F091940AGGAMKTVYMTKRCPVCLKVGSLVVDEHELFAYLRGSYVQEAFKTLSIPLREQIISGVHPHCWEELWGEERVNENIGDYSDVND
Ga0119944_100001020F084182AGGMRDENYLKNLAEVARWLDSLIAEVNHINETVEDLIAEAPVSLAAWDKVGEELWTQKK
Ga0119944_100001036F002301GGAVEPDYITEYEALVASLSVEYHRKYPMIESLDIQQTLWLWFITHTSKYFEWSELEQKDKDKLIAKSLRNAALKFCEKEKAKSVGYELLDLYYYDSSVVEAFMPSIIAESYEIPIKIKDLNHKFNKSEAVSDGNNWLVLRSDIANAFFKLTEAKQNVLRVRFSTDNNEWNLVAKDLNTTIDGARMKVQRAVNSLIRNLGGWRPYPDDEVQQADQSDESE
Ga0119944_100001040F099184GGAMEIILDKKEIDEALNFVNTMRQDKVQYKVIDRKFDAKNTSWAVNLMGYLGEKAVAKAYQVPVDNRVLTGGDEGHDLVINGKKIQVKTSTLDKLIFNALELFTADYAILVTLIGDRQQPHINSKFKIWGAISKEDFKQVCYQKDYGYGMRFVCNTEHLALKDF
Ga0119944_10000108F014845AGAAGGMPPRKKPIRKRNARKPRTVENEEHTALEMYCIWLNEYYRSLLKAGFKSELALSFVMDKTSYPNWVEYRSPNEDEIRKMLDEDDDD
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