Basic Information | |
---|---|
Taxon OID | 3300029930 Open in IMG/M |
Scaffold ID | Ga0119944_1000010 Open in IMG/M |
Source Dataset Name | Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hong Kong |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 30215 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (91.11%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | China: Pearl River Delta area | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .5 | Location on Map | ||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002301 | Metagenome / Metatranscriptome | 573 | Y |
F014845 | Metagenome / Metatranscriptome | 259 | Y |
F084182 | Metagenome / Metatranscriptome | 112 | Y |
F091940 | Metagenome / Metatranscriptome | 107 | Y |
F099184 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119944_100001018 | F091940 | AGGA | MKTVYMTKRCPVCLKVGSLVVDEHELFAYLRGSYVQEAFKTLSIPLREQIISGVHPHCWEELWGEERVNENIGDYSDVND |
Ga0119944_100001020 | F084182 | AGG | MRDENYLKNLAEVARWLDSLIAEVNHINETVEDLIAEAPVSLAAWDKVGEELWTQKK |
Ga0119944_100001036 | F002301 | GGA | VEPDYITEYEALVASLSVEYHRKYPMIESLDIQQTLWLWFITHTSKYFEWSELEQKDKDKLIAKSLRNAALKFCEKEKAKSVGYELLDLYYYDSSVVEAFMPSIIAESYEIPIKIKDLNHKFNKSEAVSDGNNWLVLRSDIANAFFKLTEAKQNVLRVRFSTDNNEWNLVAKDLNTTIDGARMKVQRAVNSLIRNLGGWRPYPDDEVQQADQSDESE |
Ga0119944_100001040 | F099184 | GGA | MEIILDKKEIDEALNFVNTMRQDKVQYKVIDRKFDAKNTSWAVNLMGYLGEKAVAKAYQVPVDNRVLTGGDEGHDLVINGKKIQVKTSTLDKLIFNALELFTADYAILVTLIGDRQQPHINSKFKIWGAISKEDFKQVCYQKDYGYGMRFVCNTEHLALKDF |
Ga0119944_10000108 | F014845 | AGAAGG | MPPRKKPIRKRNARKPRTVENEEHTALEMYCIWLNEYYRSLLKAGFKSELALSFVMDKTSYPNWVEYRSPNEDEIRKMLDEDDDD |
⦗Top⦘ |