Scaffold Ga0119944_1000001

Overview

Basic Information

• Taxon OID: 3300029930
• Scaffold ID: Ga0119944_1000001
• Source Dataset Name: Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74934
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (29.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location

• Location Name: China: Pearl River Delta area
• Coordinates
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F032199	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119944_1000001109	F032199	GAGG	MHEYCTSPKSCMALAYERETNEEMHPDGLNAAYAEIMDSVHKELESFVTKYCPKRLNEFDDLMERVFWQYH
Ga0119944_100000118	F007025	N/A	MLLVDFFSEDCCKGTELVEGWYWYQDDGDDVGGPYESEEAAIEAAEQGSGWYIQGTR
Ga0119944_10000017	F005382	N/A	MDKTAFIKRFIFNAGHSIVSVEFIKADGSLRKIVFNPCDSREIKGTGTAVKKPNIVRCRDFSIARKEGQGAWRSFDCERVVSIKANGQQVVF