Scaffold Ga0311362_10309056

Overview

Basic Information

• Taxon OID: 3300029913
• Scaffold ID: Ga0311362_10309056
• Source Dataset Name: III_Bog_N3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1640
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y
F096853	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311362_103090562	F016418	AGG	MTYRGYDLEQKSLMVGWQIAITKDDKFIRNGAVTTNLAAAMNEAEKFVDRVLAEMGTAASDAKP
Ga0311362_103090564	F096853	AGGA	MMFLRGQIFEGAIGGICRSAKVIAIVDGGRIGWLEFLDIKAPPFELNSADGPIWKLVQHG
Ga0311362_103090565	F029574	GGA	MDKGIEKMERSARYMVRLQKDGQYMVVMSRPEWANREISGFATVTEANAWIASRRQQSKL