Scaffold Ga0311362_10191032

Overview

Basic Information

• Taxon OID: 3300029913
• Scaffold ID: Ga0311362_10191032
• Source Dataset Name: III_Bog_N3 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2372
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F001997	Metagenome / Metatranscriptome	607	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311362_101910322	F000335	N/A	MPGNLIGSTPNGVMPASLCTAFSELREYAQLQNQFHDGTIQRSQLAQTSRRTFHLSKRLSASLLSALYSFWVSQNGGLTPFVFYNPFDVTSGQQIGSNYDPTGSNTQGRVTVAFRGNWAQATDVARTNVQGLELVEVA
Ga0311362_101910323	F001997	N/A	LGIESPPRKAHDDIKSIYGIDIPQNSGTIKQVVQIAQSQFGGDIAVAVRSPSVRQLVMLYSEATGQKMPLSATTPYAGSLVEQGGNLYQQASYQDGQAHTYASNIPTLGGIASGTYPTPGGPNTSGGTGATYLSMNVSGSDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVS