Basic Information | |
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Taxon OID | 3300029913 Open in IMG/M |
Scaffold ID | Ga0311362_10191032 Open in IMG/M |
Source Dataset Name | III_Bog_N3 coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2372 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000335 | Metagenome / Metatranscriptome | 1276 | Y |
F001997 | Metagenome / Metatranscriptome | 607 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0311362_101910322 | F000335 | N/A | MPGNLIGSTPNGVMPASLCTAFSELREYAQLQNQFHDGTIQRSQLAQTSRRTFHLSKRLSASLLSALYSFWVSQNGGLTPFVFYNPFDVTSGQQIGSNYDPTGSNTQGRVTVAFRGNWAQATDVARTNVQGLELVEVA |
Ga0311362_101910323 | F001997 | N/A | LGIESPPRKAHDDIKSIYGIDIPQNSGTIKQVVQIAQSQFGGDIAVAVRSPSVRQLVMLYSEATGQKMPLSATTPYAGSLVEQGGNLYQQASYQDGQAHTYASNIPTLGGIASGTYPTPGGPNTSGGTGATYLSMNVSGSDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVS |
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