Scaffold Ga0311361_10168783

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311361_10168783

Scaffold Ga0311361_10168783

Overview

Basic Information
Taxon OID	3300029911 Open in IMG/M
Scaffold ID	Ga0311361_10168783 Open in IMG/M
Source Dataset Name	III_Bog_N2 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2800
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042862	Metagenome	157	N
F053734	Metagenome	140	N
F058622	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311361_101687831	F058622	N/A	LMVAGRCPRIDSQKGEKLWKCLDTWKHETLFAKPNREGWMRGVSFFAVRELAYAQYWAYWAYCEEQWSVQRPASYPSFDEWRSAAENCPSEILDSSGLREERKALIKLAARAGKERLERAVGIYLELEAFAYWLRPMVDARSPLSGPALEEFRQRCPAIEIGSGWNWDQVWAQMRHSHFQEAEAGGWLDAVVYTAELHPRRTKVIDYWLLYWADHWPKGNPELCPSFEVWRCEAESYKPDGRDLENASSISG
Ga0311361_101687832	F053734	AGGAGG	LGNVSQLSSPGLSRKQNRAIDAILKSGAAGGISRLQRSIEKIREFHPHLSGRTIFRRTAELKLTSWNLPWTEVDKGYLLDHAREFPVADLARRFRRTQNAVYLLLWKNGESGKFQDGYTRRDLAGLVHVSPRKVSRWVRLGWLTLYQGRVKDRSLRRFLDGHSDEINAERMDRDVRFWLLSLGFHEDSTHSVQWLRDRKQSFKVHVCGRCGRNVHGNAIYRHLKVCSKKSAADTRKIEAQQMF
Ga0311361_101687834	F042862	GGAG	MGTMPMGIESNPQVHVWPRDKSGRAIEPDLVDAAERNWTRIRAYARRHQEDSARTANLLEATLVALSRARKSNGRLMRPIRNLDNYIYWAFVRRLNRQLAREPKIETVGSIQDLDSLSGIRTRAVLHSIEQELLVKEVMTFLDEIPREMFSLRKAGYSWRDVAGTLKITANNAQARFSQGFKRAQGRIMKPKAPRTTSRKGGETHE

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