Scaffold Ga0311361_10042712

Overview

Basic Information

• Taxon OID: 3300029911
• Scaffold ID: Ga0311361_10042712
• Source Dataset Name: III_Bog_N2 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7520
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311361_100427124	F023263	AGGAGG	MLGNEGMTAAKFDTNVRALRGTVMGLPVSNPSTESDFYMGLPTGANVPPLGVLAQDVVEPGYPLTSELWLDPNSGNPINGTVPPSPFVSQGRAWGLITSAPEAEVIAADTTIQADDLVYIADTYGRVTSIRNGVTGTMYYCVGRAKYPSTAVNQRIRISVTLQQVKL
Ga0311361_100427127	F019267	GGAGG	MAASATYTTLFTFRLDRRQLVRRIRVDITGLASGANTIPHGIVAPNNQSVGQTPKEENVLLTSNVAVHRTQAADSTNLYYTVDSGSGTTISVYVTV
Ga0311361_100427128	F022798	GGAG	MSYTTVSQVAGMFPTFTQNGAKGPSNALIQNYIDDVAGEIDAILQRRFQEAFSSLGFSAWQGAFTTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKSFEDQFRELSNRLNARDSDGKPLPQGGDYDFLFDPLAKVETPRPQLGGVAGGDQYPSETSGEDSTNVFKKWDRREF