NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311369_10191297

Scaffold Ga0311369_10191297


Overview

Basic Information
Taxon OID3300029910 Open in IMG/M
Scaffold IDGa0311369_10191297 Open in IMG/M
Source Dataset NameIII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1917
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013109Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0311369_101912971F013109GGAGGMAVRFFRSKATPPPDDSLQISGAIVAPSDGPSPVQLVDAGRAPHGLGVVRDQYVRKIRKSPTIRMVPSSMLVEGRRLRFAVSDNVDAYGPDGPGSPPIWAVNIHGYFAGGGMYWRESA
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