Scaffold Ga0247327_1055416

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247327_1055416

Scaffold Ga0247327_1055416

Overview

Basic Information
Taxon OID	3300029905 Open in IMG/M
Scaffold ID	Ga0247327_1055416 Open in IMG/M
Source Dataset Name	Fecal microbial communities from Fat line chicken in Harbin, China - MGJ17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Inner Mongolia Agricultural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	850
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Fecal → Unclassified → Fecal → Fecal Microbial Communities From Lean And Fat Line Chickens In Harbin, China

Source Dataset Sampling Location
Location Name	China: Harbin
Coordinates	Lat. (^o)	45.73	Long. (^o)	126.73	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053097	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247327_10554162	F053097	N/A	MFDIKGSKIVFSTEDLAIPPFRDFYNNAKDKNLAKKQLEYVIWTYKWNSPYEAYPENERPQRVAQDVFGTDYEPDADVKELIKRFNEF

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