NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247319_1000077

Scaffold Ga0247319_1000077


Overview

Basic Information
Taxon OID3300029904 Open in IMG/M
Scaffold IDGa0247319_1000077 Open in IMG/M
Source Dataset NameFecal microbial communities from Lean line chicken in Harbin, China - MGJ1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInner Mongolia Agricultural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98224
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (35.88%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Fecal → Unclassified → Fecal → Fecal Microbial Communities From Lean And Fat Line Chickens In Harbin, China

Source Dataset Sampling Location
Location NameChina: Harbin
CoordinatesLat. (o)45.73Long. (o)126.73Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053097Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0247319_1000077150F053097N/AMFDIKGDKIVFSTQDLAIPPFKDFYNNAKDKNLAKKQLEYVVWRYKWNTPYEAYPENERSERVALDVFGAKYEPDASVKELIKRFNEF

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