Scaffold Ga0247271_106413

Overview

Basic Information

• Taxon OID: 3300029903
• Scaffold ID: Ga0247271_106413
• Source Dataset Name: Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1992
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota, Marcell Experimental Forest
• Coordinates
  • Lat. (^o): 47.50505
  • Long. (^o): -93.48901667
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015384	Metagenome / Metatranscriptome	255	Y
F017965	Metagenome / Metatranscriptome	237	Y
F036885	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247271_1064132	F036885	GGGGG	MTDKTDRERVIAEITLSHLTRLGNEQGRPVSREQALAFLNQEGRAFEMWKHMMQAAEEFIAGSLFQHSFSPGGQDGFASRTGTGPSISTAAR
Ga0247271_1064133	F015384	GAG	MSWFHSSAPPVDARNHASPAEVVACFQDQRNVLGRLAFLITGDQATAEQAVIQACEMTLRGNSPFRNWLFEWAKAATIASAISNGTEAIRICEAAHKDRQCPHVEHLTQGDAQERTASHDMDSRQPGEPGGGESRRFARCVENAGTGGK
Ga0247271_1064135	F017965	N/A	PESASANNYLPVESVCTKRIDLTDMSDQIAHRDALYLFACHLEWRTKRNLTAYQQLLAALDDHDDDIRRLAESLLHRRAPRPARXXXEVAGRSASAESKPF