Scaffold Ga0247271_100319

Overview

Basic Information

• Taxon OID: 3300029903
• Scaffold ID: Ga0247271_100319
• Source Dataset Name: Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13630
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota, Marcell Experimental Forest
• Coordinates
  • Lat. (^o): 47.50505
  • Long. (^o): -93.48901667
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017340	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247271_1003192	F017340	GGA	MKIYRGTALLAGLLVAALFANAASRSNTIQIKVLDSETRSLGTNDNGVPVNCEQLTFDAYCRSSRTAPLMNTLLVQEGNNRPYRIACTAESSASRCTPLPRGESFEARREKNGVLVYYVDERGKLRSQLYKPXXXXGSGRAAGSDSKPGAGFSSE