Scaffold Ga0247058_1002468

Overview

Basic Information

• Taxon OID: 3300029902
• Scaffold ID: Ga0247058_1002468
• Source Dataset Name: Cryconite microbial communities from ice sheet in Thule, Greenland - THU-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DMAC, Technical University of Denmark
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11175
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location

• Location Name: Greenland: Thule
• Coordinates
  • Lat. (^o): 76.23
  • Long. (^o): -68.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083559	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247058_10024686	F083559	GAGG	MDNVVQLQNTVGPSGSHRMDIIPHTVREFGVEARKAGKAWEAAFNGPIQSWPDAESGALTYGVTVRLSRMKDPVSRELYSTNILFYLPAGEMHGMHNVYDMAQRFPFTRIRGPRTSVPHCPQREGRLWYDANPEGVIMEDLRLTPAALPDGRPGFFVTGQGYRGKVMMPDGRFVHDVGVYGGYLDTEERPGQLELQHLFGGIEFGATFTDDDAGRMLAELGEGIWVKGITGNGAEGTHVESYKNSVKLPCLDGRKTLIGARSMSETKQIAYFESQSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDYPETFDAVHPGINEQYEGWVVWLKFDADGRPVIEACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYATVTAQLSSHGRS