Scaffold Ga0247051_1001300

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247051_1001300

Scaffold Ga0247051_1001300

Overview

Basic Information
Taxon OID	3300029901 Open in IMG/M
Scaffold ID	Ga0247051_1001300 Open in IMG/M
Source Dataset Name	Cryconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-B3a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DMAC, Technical University of Denmark
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11213
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location Name	Greenland: Kangerlussuaq
Coordinates	Lat. (^o)	67.09	Long. (^o)	-50.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012906	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247051_10013007	F012906	AGGAGG	MNIEIRKPELVHRVQAQIQSGHFQDADELIEKALDALDEQAGIAMPETATGAVVLAALQASPYRDIDLTPPRVRLANARDVVL

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