Scaffold Ga0245317_100401

Overview

Basic Information

• Taxon OID: 3300029872
• Scaffold ID: Ga0245317_100401
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37584
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64146
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (38.20%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F057001	Metagenome	137	Y
F064725	Metagenome	128	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245317_10040110	F080673	AGGA	MNEIELLRLQDEALSYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMNDNKERIDFMFVYFMARIL
Ga0245317_10040118	F057001	AGG	MTNKELNKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNSTFCSYKEVEREYYDKNNQDKNKKLKMNEIEDIAILGSSHKHFGYNEPIEFDFGIYYETFNGADKRIIKCAVPIKRYTFSLISKCITYYLTHPKNDR
Ga0245317_1004012	F085718	AGGAGG	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVEDDNADDYIILRYNETGRRNINSQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKXXXXXXXXXXXXXXXXGNIYLQGSSKSSVSYYVDKLEEDECFDELCEKIRVKRDRIYNMEIISLSDDEAAI
Ga0245317_10040127	F083452	GGA	MSGRIKIKSKDKDKRPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFMEVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0245317_10040131	F102167	N/A	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNTLTGDGNTAIK
Ga0245317_1004014	F078006	N/A	MDNTLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNSDNYNKKLFKEI
Ga0245317_10040151	F093883	N/A	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKCLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVKEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0245317_10040157	F089592	N/A	MKDILKSKNVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTEKVKDVKKKEDVGEGDKEE
Ga0245317_10040164	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRGLRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDFQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPSDMWNYFDINTLPFFEVDKINPNITNFDFLNDWVSGERRTGWNDDNMSGRGLDHLTGFFVYHSNSIRVDKLPDYIYEMRSITWFVMDYSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYGSQYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245317_10040188	F064725	AGAAG	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAIVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLV