Scaffold Ga0245314_100316

Overview

Basic Information

• Taxon OID: 3300029871
• Scaffold ID: Ga0245314_100316
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37545
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72819
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (35.94%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245314_10031611	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFISRKPGMANVDWGDGIKEQFPMTKVQGEDEYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYADIQVCKMTSFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRTKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQALDLSSCYLDRYIKEFNDLPKLTSLRINPGPPDMWNYFDINTLPFFEVDKINPNIAYFCFLNDWVSGERGTGWNDDNMPGRGLEHLTSFTANNSDSLRMDKLPDYIYEMRAIIQFEVNASTHGQKRSDDFVDSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYAAVCPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0245314_10031614	F089590	N/A	MKDKDMIERVGALWNIALAYGASCWAYFQPVHNLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEDAGMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS
Ga0245314_10031615	F075481	AGAAG	MMRLRISLRAIFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMINEVIDRRMVEIKTSDLNADIIITERKFDTDKDVDPATGERPVSSRTDTHIVIGRRDSTVTADSLGIDKTRNDIKNMDNKIDIKSKDVDDKDESKWPTAIIFISILGILVVLFVLLKRLGLIK
Ga0245314_1003164	F089592	N/A	MKEILKSKNVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTKKVKDVKKKEDVDGGDKVNTEE
Ga0245314_10031648	F077313	N/A	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSAYDDQKKALEKLKKNDKIDDENTKRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRQRMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLDYYKTFNPVAYEAYMNATGNTKARALQDAIYGQTSGWMGLATAENSIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMGIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWSRYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245314_1003165	F089591	GGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLIYWKSLNKINHIDDPESTSFDLPDDYLWFSNIKGAFSYKGCEVGDFVMWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYENGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK
Ga0245314_10031651	F050794	N/A	MAPVGTLYIMQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKLMMRDLLNELKGDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN