Scaffold Ga0245310_100961

Overview

Basic Information

• Taxon OID: 3300029861
• Scaffold ID: Ga0245310_100961
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37399
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26679
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245310_10096139	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245310_10096141	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISLNIMQITFTV
Ga0245310_10096145	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLNYMGNLPMVPDLNKPIEIQVSATRQIPLEQNKEVQTRIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLISLSQHHKR