Scaffold Ga0134606_10240426

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134606_10240426

Scaffold Ga0134606_10240426

Overview

Basic Information
Taxon OID	3300029827 Open in IMG/M
Scaffold ID	Ga0134606_10240426 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Battelle Memorial Institute
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	557
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion

Source Dataset Sampling Location
Location Name	USA: Barataria Bay
Coordinates	Lat. (^o)	29.468	Long. (^o)	-89.882	Alt. (m)		Depth (m)	.08 to .12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066901	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134606_102404261	F066901	AGGGGG	MKHRREAQVAWQICKLISELDVLLWDLFWDEFEAIYEREEAEKYWGSIIHTDKHTLQ

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