Scaffold Ga0239581_1012262

Overview

Basic Information

• Taxon OID: 3300029798
• Scaffold ID: Ga0239581_1012262
• Source Dataset Name: Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Uppsala University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2539
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location

• Location Name: Finland: Alinen Mustajarvi in Hameenlinna
• Coordinates
  • Lat. (^o): 61.208142
  • Long. (^o): 25.113609
  • Depth (m): 5.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F034448	Metagenome	174	Y
F089853	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0239581_101226210	F015302	N/A	MKDEYYSDSVARLDTIIGGDTQHFLRLQRVKNEWDELAREVPVGQGFLTFDDYVREYYGVKLQYDGDNVSLAYSVVDEKKHLVFILKFNR
Ga0239581_101226211	F034448	N/A	VHVNNFSLPRPPEQALAQCHAVYINDPAFRMWAMKKWCREQKLSLMWTELVETSDVSAYFDEAAAFYFIDPA
Ga0239581_10122622	F089853	N/A	MPPVMTADPVTGHRYHGWQPCIDWCSQNCSGPWLFVSEGVFEFELDTDYVLFMLRWA