Scaffold Ga0243129_1000717

Overview

Basic Information

• Taxon OID: 3300029797
• Scaffold ID: Ga0243129_1000717
• Source Dataset Name: Sediment microbial communities from Yellow Sea, Weihai, China - HGD.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shandong University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13872
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sediment → Sediment Microbial Communities From Yellow Sea, Weihai, China

Source Dataset Sampling Location

• Location Name: China: Weihai
• Coordinates
  • Lat. (^o): 37.31
  • Long. (^o): 122.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051165	Metagenome / Metatranscriptome	144	Y
F103319	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243129_100071720	F051165	GAG	MTTSFQKALAVLASVASVLAGIVTIASYLSGEDVALPPSLITPSSESQPIIIHARVVFIEKNMTYAIDYDKNLILLNESTIIV
Ga0243129_10007176	F103319	GGAGG	MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLAQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKIPR