Scaffold Ga0183757_1006450

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1006450
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3763
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F042628	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10064502	F042628	AGGA	MGKYNKSSKNNIFKEEPEISVSEHTVEKNGRKMKMVIPEGKIGYGDTESHAQMAADLATKHSDDTKAGQRVYEEVRKHRDSRNRGTTVEQNKINLAKRKMAGRMPVIQTFNITDPVTGQVIAQEFLFMKTDRSGLTRPLKIRVDVQSGKTTEVPI
Ga0183757_10064505	F028039	AGGAG	MTTLLGRWETIIKQIKFEKKWDDVLKKHLKDNNLKELPEPDWSDDPTMAYIYLPARSLNGKSFRLDRSKARMFPESIVGYLEKGGLMKLPAKVAASKTEEQLPKMETEKPKPQKIKLPKIGE
Ga0183757_10064506	F041493	N/A	MIESNDDHLYTTIYDSLSGDPFRVKTERVEYHLSCTKRRSKLEGKSLVFYGEYIPAFVKTKEEIIGSPSSGKIDRVAPVSQVKAGKRRRGRRGRKK